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Discrete and Topological Models in Molecular Biology Abstracts

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  NameTitle
1ViewAgbandje-McKenna, MavisDefining VP-VP interactions that drive capsid assembly for Adeno-associated Viruses
2ViewBuck, DorothyThe Classification of Rational Subtangle Replacements, with Applications to Complex Nucleoprotein Assemblies
3ViewCarbone, AlessandraCombinatorial methods to extract co-evolution signals among residues in proteins
4ViewCraciun , GheorgheGraph-theoretic criteria for multistability and persistence in biological networks
5ViewDarcy, IsabelDNA knot distances
6ViewDiao, Yuanan Generating equilateral random polygons in confinement
7ViewDolzhenko, EgorSTAGR: Software To Annotate Genome Rearrangement
8ViewDrillon, GuénolaCombinatorics of Chromosomal Rearrangements
9ViewDykeman, EricUsing graph theory to identify genome organization and packaging mechanisms in ssRNA viruses
10ViewGoldman, AaronA Systems Biology Approach to the Origin of Life and Early Metabolism
11ViewIndelicato, GiulianaNon-icosahedral pathways for the expansion of icosahedral viral capsids: a coarse grained model
12ViewLandweber, LauraRadical Genome Architectures in Oxytricha
13ViewLaubenbacher, ReinhardAlgebraic models in systems biology
14ViewPadberg, Mary ThereseExploring the Conformations of Protein-Bound DNA: Adding Geometry to Known Topology
15ViewPoznanovikj, SvetlanaAsymptotic enumeration of substructures in a stochastic context-free grammar model of RNA folding
16ViewPrusinkiewicz, PrzemyslawConstraints of space in plant development
17ViewSavageau, MichaelA Generic Characterization Of Phenotypic Repertoire
18ViewScharein, RobertComputational Knot Theory with KnotPlot
19ViewSchroeder, Susan Ensemble of Secondary Structures for Encapsidated Satellite Tobacco Mosaic Virus RNA Consistent with Chemical Probing and Crystallography Constraints
20ViewShimokawa, KoyaTangle analysis of unlinking by XerCD-diff-FtsK system
21ViewSitharam, Meera Isolating Crucial Interactions in Virus Assembly by Approximate Configurational Entropy using EASAL
22ViewStockley, PeterOutwitting the viral machines: A joint challenge for biology, physics and mathematics.
23ViewSwenson, MProfiling RNA Secondary Structures
24ViewTwarock, ReidunViruses and Geometry - Where Symmetry meets Function
25ViewValencia, KarinTopological characterization of knots and links arising from site-specific recombination on twist knot substrates.
26ViewWolfe, Brian NUPACK: Analysis and Design of Nucleic Acid System